PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000836661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 151aa    MW: 17147.3 Da    PI: 10.0109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000836661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-3268126159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vk+++fprsYY+Ct++gC+vkk+++r ++d+ +v++tY g H+h+
  MDP0000836661  68 LDDGYRWRKYGQKVVKNNKFPRSYYKCTHQGCMVKKQIQRLSKDEGIVVTTYDGIHTHR 126
                    59********************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-3353126IPR003657WRKY domain
SuperFamilySSF1182902.09E-2960127IPR003657WRKY domain
PROSITE profilePS5081128.98863128IPR003657WRKY domain
SMARTSM007742.7E-3768127IPR003657WRKY domain
PfamPF031061.3E-2569126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDHNNQIFFL GSSASSSASP VFSSSQSSFP LCLGDRNAGM MKSGRKEGDK VNKKQKYAFQ  60
TRSQVDILDD GYRWRKYGQK VVKNNKFPRS YYKCTHQGCM VKKQIQRLSK DEGIVVTTYD  120
GIHTHRIDEY SAENLEQIIR HMQASTVPNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2858127776Probable WRKY transcription factor 4
2lex_A1e-2858127776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346674.11e-111PREDICTED: probable WRKY transcription factor 75
RefseqXP_008374228.11e-111PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA22e-44WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLM5WAY92e-55M5WAY9_PRUPE; Uncharacterized protein
STRINGSi026859m3e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-45WRKY DNA-binding protein 75